Are you saying one of your remotes, opens the lift gate and the other pops the rear window? How did that happen? According to the manual, The rear latch button on the remote and on the drivers side door pop the window on all models that don't have the power assist rear tailgate and opens/closes the tailgate on models that have a power hatch. On models with the power hatch, the only way to open the rear window is the button above the rear license plate. Sounds like something was frankinstiened to me.
Yes I think that is what I am saying. I have power assist rear tailgate. One opens as expected and the other pops the window. I am thinking of just reprogramming both and seeing if that resets them. What do you think?